Osciences, USA). Ten thousand events per sample were acquired and cell

Osciences, USA). Ten thousand events per sample were acquired and cell cycle distribution was calculated using BD CellQuestTM software (BD Biosciences, USA).Real Time PCR detection on the expression of activationinduced deaminase (AID)Total RNA from bursa isolated from embryos (day 18, 19, 20 and 21), agglomerate (24, 48 and 72 hours post-culture) and emigrant cells (48 and 72 hours post-culture) was extracted with TRIZOL (Invitrogen) according to the manufacturer’s instructions. The purity and concentration of extracted RNA was then measured with a spectrophotometer. The detection of AID gene and 28 sRNA in embryonic bursa, agglomerate and migrating cells was carried out with two-step RT-real time PCR as described in the manufacturer’s instructions. The AID gene was ML 281 amplified with primers 59- TTC CTA CGC TAC ATC TCA G-39(forward) and 59- CCC CTC AGG CTC AGC CTT G-39 (reverse) [14]. Detection of 28S RNA served as a positive control in the real time PCR and the primers used were 59- GGC GAA GCC AGA GGA AAC T-39 (forward) and 59- GAC GAC CGA TTT GCA CGT C-39 (reverse) [15]. Firstly, the cDNA was synthesized using Tetro cDNA Synthesis Kit (BIOLINE). The 20 ml of reaction mixture contained a final concentration of 16 RT buffer, 0.5 mM dNTP mix, 0.5 mM of each forward and reverse primer (gene-specific primers), 10 units of MMLV reverse transcriptase, 1 unit of RNase inhibitor and 200 ng/ml of total RNA was prepared. The reaction mixture was then incubated at 45uC for 30 min followed by 85uC for 5 min. Real time PCR was performed with the SensiFastTM SYBR No-ROX Kit (BIOLINE). The reaction mixture was prepared with the final volume of 20 ml which consisted of 16 SensiFast No-ROX Mix, 0.5 mM of each forward and reverse primer (gene-specific primers) and 2 ml of cDNA. The reaction mixture was then subjected to 2 min initial incubation at 95uC, 40 cycles of 95uC for 20 s, 57uC for 20 s and 72uC for 15 s. Upon completion of the PCR amplification, the specificity of the amplified product was confirmed by melting curve analysis whereby the reaction was incubated by raising the incubation temperature from 70uC to 95uC in 0.5uC increments with a hold of 5 second at each increment.Proliferation study of agglomerate and emigrant splenocytes using CFSE labellingInVitrogen CellTrace CFSE kit was used to investigate the proliferation of lymphocytes in the cultured splenocytes, agglomerate and emigrant cells. Before establishment of the in vitro system of chicken lymphoid tissues, only lymphocytes (106 cells/ml) from spleen of 15 day chick embryo were resuspended in prewarmed PBS/0.1 BSA and stained with CFSE at the concentration of 10 mM. The 1317923 suspension was then incubated at 37uC for 10 minutes followed by addition of 5 volumes of ice-cold medium on ice for 5 minutes to quench the staining. Avasimibe Excess dye was removed by washing twice with DMEM supplemented with 5 FCS using centrifugation at 2006 g for 10 min. Lastly the in vitro culture was prepared using the CFSE stained lymphocytes and unstained epithelial cells. The cells were cultured following the method and condition for agglomerate culture as previously described and harvested after 48 hours to measure stain intensity using a FACS Calibur flow cytometer (BD Biosciences, USA).Flow cytometry studies on fresh mixed cell population, dissociated agglomerates and emigrant cells dispersed on the membraneA sample of 56105 cells from the pre-cultivation mixture of proventriculus and intestine with splenocytes.Osciences, USA). Ten thousand events per sample were acquired and cell cycle distribution was calculated using BD CellQuestTM software (BD Biosciences, USA).Real Time PCR detection on the expression of activationinduced deaminase (AID)Total RNA from bursa isolated from embryos (day 18, 19, 20 and 21), agglomerate (24, 48 and 72 hours post-culture) and emigrant cells (48 and 72 hours post-culture) was extracted with TRIZOL (Invitrogen) according to the manufacturer’s instructions. The purity and concentration of extracted RNA was then measured with a spectrophotometer. The detection of AID gene and 28 sRNA in embryonic bursa, agglomerate and migrating cells was carried out with two-step RT-real time PCR as described in the manufacturer’s instructions. The AID gene was amplified with primers 59- TTC CTA CGC TAC ATC TCA G-39(forward) and 59- CCC CTC AGG CTC AGC CTT G-39 (reverse) [14]. Detection of 28S RNA served as a positive control in the real time PCR and the primers used were 59- GGC GAA GCC AGA GGA AAC T-39 (forward) and 59- GAC GAC CGA TTT GCA CGT C-39 (reverse) [15]. Firstly, the cDNA was synthesized using Tetro cDNA Synthesis Kit (BIOLINE). The 20 ml of reaction mixture contained a final concentration of 16 RT buffer, 0.5 mM dNTP mix, 0.5 mM of each forward and reverse primer (gene-specific primers), 10 units of MMLV reverse transcriptase, 1 unit of RNase inhibitor and 200 ng/ml of total RNA was prepared. The reaction mixture was then incubated at 45uC for 30 min followed by 85uC for 5 min. Real time PCR was performed with the SensiFastTM SYBR No-ROX Kit (BIOLINE). The reaction mixture was prepared with the final volume of 20 ml which consisted of 16 SensiFast No-ROX Mix, 0.5 mM of each forward and reverse primer (gene-specific primers) and 2 ml of cDNA. The reaction mixture was then subjected to 2 min initial incubation at 95uC, 40 cycles of 95uC for 20 s, 57uC for 20 s and 72uC for 15 s. Upon completion of the PCR amplification, the specificity of the amplified product was confirmed by melting curve analysis whereby the reaction was incubated by raising the incubation temperature from 70uC to 95uC in 0.5uC increments with a hold of 5 second at each increment.Proliferation study of agglomerate and emigrant splenocytes using CFSE labellingInVitrogen CellTrace CFSE kit was used to investigate the proliferation of lymphocytes in the cultured splenocytes, agglomerate and emigrant cells. Before establishment of the in vitro system of chicken lymphoid tissues, only lymphocytes (106 cells/ml) from spleen of 15 day chick embryo were resuspended in prewarmed PBS/0.1 BSA and stained with CFSE at the concentration of 10 mM. The 1317923 suspension was then incubated at 37uC for 10 minutes followed by addition of 5 volumes of ice-cold medium on ice for 5 minutes to quench the staining. Excess dye was removed by washing twice with DMEM supplemented with 5 FCS using centrifugation at 2006 g for 10 min. Lastly the in vitro culture was prepared using the CFSE stained lymphocytes and unstained epithelial cells. The cells were cultured following the method and condition for agglomerate culture as previously described and harvested after 48 hours to measure stain intensity using a FACS Calibur flow cytometer (BD Biosciences, USA).Flow cytometry studies on fresh mixed cell population, dissociated agglomerates and emigrant cells dispersed on the membraneA sample of 56105 cells from the pre-cultivation mixture of proventriculus and intestine with splenocytes.